Cryo-EM Table of Contents

Section dedicated to Cryo-Electron Microscopy and ImageJ

1. Introduction [Link] 
2. Pipeline in cryo-EM [Link]
   

1. Pre-processing

1. Raw Movie [Link]
2. 2D Alignment by cross-correlation [Link]
   
3. Point Spread Function in cryo-EM: Contrast Transfer Function [Link]
   
4. Particle Picking [Link]
   

2. 2D classification

1. K-means - Machine Learning [Link]

3. 3D reconstruction

1. Tomography (see the section specifically dedicated [Link]).
2. Isolated Particles 3D Reconstruction

4. Initial 3D Model

1. Generating Model from a 3D reference [Link]
2. Model bias [Link]
   
3. ab initio Model - Common Lines [Link]
4. ab initio Model - Random Approach [Link]